A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs

Computer folding of RNA tetraloops: identification of key force field deficiencies

Empirical corrections to the Amber RNA force field with Target Metadynamics

Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments

Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations

Accurate multiple time step in biased molecular simulations

Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method

PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure

An Efficient Null Model for Conformational Fluctuations in Proteins

Generative probabilistic models extend the scope of inferential structure determination

Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Accuracy of the pseudopotential approximation in ab initio theoretical spectroscopies